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carlv

  Joined on Nov 17, 2016

2 Projects

hic2cool

Last released on Jun 15, 2017

Converter between .hic files (from juicer) and single-resolution or multi-resolution .cool files (for cooler). Both hic and cool files describe Hi-C contact matrices. Intended to be lightweight, this can be used as a simple imported package or a stand-alone Python file for command line conversion.

pypairix

Last released on Aug 18, 2017

Pypairix is a Python module for fast querying on a pairix-indexed bgzipped text file that contains a pair of genomic coordinates per line. For more information, see: https://github.com/4dn-dcic/pairix/blob/master/README.md.

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