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Detect and evaluate tandem repeats in genomic sequence data.

Project Description

# TandemRepeats

TandemRepeats is a highly modularized, flexible sequence tandem repeats annotation Python2/3 library.

  • Large scale annotation of tandem repeats with de novo detectors, and sequence profile models
  • Statistical significance testing, overlap detection, and filtering of annotations
  • Refinement of tandem repeat annotations with circular profile hidden Markov models
  • User-defined output formats

The source code is [documented on GitHub IO].

### Version 0.3.0

### Installation

TandemRepeats is available on [Pypi] and can be installed with [pip] for Python>2.7 and Python>3.2:

`sh $ pip install tandemrepeats `

### License

GNU

[documented on GitHub IO]:http://elkeschaper.github.io/TandemRepeats/ [Pypi]:https://pypi.python.org/pypi [pip]:https://pip.pypa.io/en/latest/

Release History

Release History

This version
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0.3.23

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0.3.22

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0.3.21

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0.3.20

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0.3.19

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0.3.18

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0.3.17

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0.3.14

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0.3.13

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0.3.12

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0.3.11

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0.3.9

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0.3.8

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0.3.7

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