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Visualize (multiple) sequence alignment (MSA) with colored boxes

Project Description
SeqPlot
=======

Plot overview of Multiple Sequence Alignments (MSA) using colored boxes


######################################
# seqPlot.py
######################################
usage:
seqPlot.py -f multifasta alignment
options:
-f, --fasta=FILE multifasta alignment (eg. "align.fas")

[ -o, --outfile=STR output file (png) ]
[ -c, --colorscheme=STR STR in ("default", "clustal", "lesk",
"cinema", "maeditor", "dna",
"aacid") ]
[ -x, --boxwidth=INT draw INT pixels per residue (x direction) ]
[ -y, --boxheight=INT draw INT pixels per residue (y direction) ]

adding identifiers:
[ -s, --show_names also draw sequence ids ]
[ -F, --font_file=FONT path to truetype font (monospace fonts recommended) ]
Release History

Release History

This version
History Node

0.1.0

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File Name & Checksum SHA256 Checksum Help Version File Type Upload Date
seqPlot-0.1.0-py2.7.egg (316.6 kB) Copy SHA256 Checksum SHA256 2.7 Egg Oct 7, 2014
seqPlot-0.1.0.tar.gz (17.6 kB) Copy SHA256 Checksum SHA256 Source Oct 7, 2014

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