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GimmeMotifs is a motif prediction pipeline.

Project Description

Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments.

See full GimmeMotifs documentation for detailed installation instructions and usage examples.

Easy installation

The most straightforward way to install GimmeMotifs is via conda using the bioconda channel.

$ conda install gimmemotifs -c bioconda

Quick start

Download a genome

Create a directory to store genome files.

$ mkdir $HOME/genomes/

To download and index a genome:

$ gimme genome $HOME/genomes/ hg38

Alternatively, you can index a genome directory with chromosome FASTA files on your computer.

$ gimme index /usr/share/genomes/hg19 hg19

Predict some motifs:

$ gimme motifs my_peaks.bed -g hg38 -n my_motifs

Release History

Release History

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0.10.0b4

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0.10.0b2

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0.10.0b1

This version
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0.9.0.2

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0.9.0.1

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0.9.0.0

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0.8.9.1

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0.8.9.0

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0.8.8.2

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0.8.8.1

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0.8.8

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0.8.7

Download Files

Download Files

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File Name & Checksum SHA256 Checksum Help Version File Type Upload Date
gimmemotifs-0.9.0.2.tar.gz (41.1 MB) Copy SHA256 Checksum SHA256 Source Mar 23, 2016

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